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WormBase Release WS195



BLAST/BLAT RESULTS
 


* Links to gbrowse and alignment image are limited only to top hits.


BLASTN 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= F01_C53F1_11.ab1 ABIX Testing -- no comment
         (947 letters)

Database: c_elegans nucleotide release [WS195] 
           7 sequences; 100,281,427 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

II                                                                    159   1e-37
[Alignment][Genome View]



>II
          Length = 15279324

[Genome View]



 Score =  159 bits (80), Expect = 1e-37
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                            
Query: 72       ttgccattgccctcacctcttgttgaatccatatgtgatgagcggagggaggttgtgagt 131
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10547829 ttgccattgccctcacctcttgttgaatccatatgtgatgagcggagggaggttgtgagt 10547770

                                    
Query: 132      aaaatggatgtgggaagcga 151
                ||||||||||||||||||||
Sbjct: 10547769 aaaatggatgtgggaagcga 10547750

  Database: c_elegans nucleotide release [WS195]
    Posted date:  Oct 23, 2008  6:41 PM
  Number of letters in database: 100,281,427
  Number of sequences in database:  7
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 7
Number of Hits to DB: 430,693
Number of extensions: 19192
Number of successful extensions: 1
Number of sequences better than  1.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 947
Length of database: 100,281,427
Length adjustment: 19
Effective length of query: 928
Effective length of database: 100,281,294
Effective search space: 93061040832
Effective search space used: 93061040832
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 19 (38.2 bits)
S2: 19 (38.2 bits)