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WormBase Release WS195



BLAST/BLAT RESULTS
 


* Links to gbrowse and alignment image are limited only to top hits.


BLASTN 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= F01_C21F1_11.ab1 ABIX Testing -- no comment
         (854 letters)

Database: c_elegans nucleotide release [WS195] 
           7 sequences; 100,281,427 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

III                                                                   186   5e-46
[Alignment][Genome View]

V                                                                      40   0.069
[Alignment][Genome View]

IV                                                                     38   0.27 
[Alignment][Genome View]



>III
          Length = 13783681

[Genome View]



 Score =  186 bits (94), Expect = 5e-46
 Identities = 94/94 (100%)
 Strand = Plus / Minus

                                                                           
Query: 35      ttcgtccaccgctctccacttatagtacgaatctttatttcatttattgaaatgttgtcg 94
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9910649 ttcgtccaccgctctccacttatagtacgaatctttatttcatttattgaaatgttgtcg 9910590

                                                 
Query: 95      ttcgtcaaacgttctaaacaacccgcatatttca 128
               ||||||||||||||||||||||||||||||||||
Sbjct: 9910589 ttcgtcaaacgttctaaacaacccgcatatttca 9910556


>V
          Length = 20919569

[Genome View]



 Score = 40.1 bits (20), Expect = 0.069
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 69       ttatttcatttattgaaatg 88
                ||||||||||||||||||||
Sbjct: 13983632 ttatttcatttattgaaatg 13983651


>IV
          Length = 17493784

[Genome View]



 Score = 38.2 bits (19), Expect = 0.27
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 68      tttatttcatttattgaaa 86
               |||||||||||||||||||
Sbjct: 5637786 tttatttcatttattgaaa 5637804

  Database: c_elegans nucleotide release [WS195]
    Posted date:  Oct 23, 2008  6:41 PM
  Number of letters in database: 100,281,427
  Number of sequences in database:  7
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 7
Number of Hits to DB: 585,212
Number of extensions: 28399
Number of successful extensions: 3
Number of sequences better than  1.0: 3
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 854
Length of database: 100,281,427
Length adjustment: 18
Effective length of query: 836
Effective length of database: 100,281,301
Effective search space: 83835167636
Effective search space used: 83835167636
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 19 (38.2 bits)
S2: 19 (38.2 bits)